PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g022190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 268aa    MW: 30605.4 Da    PI: 6.9567
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g022190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-15133222198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   ++ lp +f++++  +k ++ ++tl de+ +++  k+   k++    l++GW++F  +++L +gD vvF+l+  ++f  +v 
  Csa01g022190.1 133 FVKPMLQSHVTGGFWMGLPLHFCKTYL-PK-RDEMMTLVDEEDEEFVAKYLAAKTG----LSGGWRGFSIDHQLVDGDAVVFHLIAPTTF--KVY 219
                     89*********************9994.33.5569***************555555....************************986777..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  Csa01g022190.1 220 IIR 222
                     877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-19124223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-24126224IPR015300DNA-binding pseudobarrel domain
CDDcd100175.73E-25131222No hitNo description
SMARTSM010191.6E-20133224IPR003340B3 DNA binding domain
PfamPF023626.3E-14133222IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039133224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVESELSYEQ IRLNRVEENK KRMGELNLNK LAQSLRVSSS PKPSPSKTRT MRTPVDFSEI  60
RRSSRAKGPP PSYKESYLDP YSQFGLEPLE RPRRSCQRRN LLNRVYASDE ARMYAIDRAE  120
TLQSSLDPEF PSFVKPMLQS HVTGGFWMGL PLHFCKTYLP KRDEMMTLVD EEDEEFVAKY  180
LAAKTGLSGG WRGFSIDHQL VDGDAVVFHL IAPTTFKVYI IRVNDDENND SDGDEENDIE  240
SNEKQEENVS EAKSLRSSGK RKRGGRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936211e-139AB493621.1 Arabidopsis thaliana At3g19184 mRNA for hypothetical protein, partial cds, clone: RAAt3g19184.
GenBankDQ4875611e-139DQ487561.1 Arabidopsis thaliana clone 0000004119_0000003454 unknown protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507495.10.0PREDICTED: B3 domain-containing protein At3g19184-like
SwissprotQ1G3M31e-143Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLR0I0401e-153R0I040_9BRAS; Uncharacterized protein
STRINGAT3G19184.11e-141(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-117B3 family protein